Member SNN::setConnectionMonitor (int grpIdPre, int grpIdPost, FILE *fid)

: distinguish the function call at CONFIG_STATE and SETUP_STATE, where group(connect)Config[] might not be available

"

: assert simulation use GPU first

: rewrite user-define call-back function

; but note connectConfigs[netId][] are NOT complete, lack of exeternal incoming connections

: connId is global connId, use connectConfigs[netId][local connId] instead,

, Noffset is updated after publish group configs

: How does networkConfigs[netId].numGroups be availabe at this time?! Bug?!

: use it when necessary

: redundant??

Member SNN::saveSimulation (FILE *fid, bool saveSynapseInfo=false)

: replace with faster version

Member SNN::setSpikeRate (int grpId, PoissonRate *spikeRate, int refPeriod)

: distinguish the function call at CONFIG_STATE and RUN_STATE, where groupConfigs[0][] might not be available

Member SNN::setSpikeGenerator (int grpId, SpikeGeneratorCore *spikeGenFunc)

: distinguish the function call at CONFIG_STATE and SETUP_STATE, where groupConfigs[0][] might not be available

"

: are these ramping thingies still supported?

Member SNN::setGroupMonitor (int grpId, FILE *fid)

: distinguish the function call at CONFIG_STATE and SETUP_STATE, where groupConfigs[0][] might not be available

Member SNN::setISTDP (int grpId, bool isSet, STDPType type, STDPCurve curve, float ab1, float ab2, float tau1, float tau2)

: separate STDPType to ESTDPType and ISTDPType

Member SNN::createSpikeGeneratorGroup (const std::string &grpName, const Grid3D &grid, int neurType, int preferredPartition, ComputingBackend preferredBackend)

:IS THIS NECESSARY?

Member COMPACTION_ALIGNMENT_PRE

what are the following for? why were they all the way at the bottom of this file?

"

: check WithESTDPtype and WithISTDPtype first and then do weight change update

is this assert supposed to be for pos?

: make sure this is right when separating cpu_module to a standalone class

: currently this function clear nSpikeCnt of manager runtime data

: if endIdx - startIdx > 64 * 128

: skip this step if all spike gen neuron are possion neuron (generated by rate)

Member STP_BUF_POS (nid, t, maxDelay)

D is the SNN member variable for the max delay in the network, give it a better name dammit!!

Member SNN::updateSpikeMonitor (int grpId=ALL)

: modify this for multi-GPUs

Page Chapter 13: Example Networks

MB

KDC

Page Chapter 7: Monitoring

extend

Class SpikeGeneratorFromVector

change to vector of AER or 2D vector, so that each neuron can have their own spike times.

"

: there should be a standardized SpikeReader++ utility

: this is a hack...to get the size of the header section

Class SpikeMonitor

finish documentation

Class GroupMonitor

finish documentation

"

: measure total execution time, and GPU excution time

: update summary format for multiGPUs

Member SNN::updateNeuronMonitor (int grpId=ALL)

: modify this for multi-GPUs

"

\DEPRECATED this one moved to group-based

this function is a mess

: wrong to use groupConfigs[0]

Member SNN::getWeightMatrix2D (short int connId)

: modify this for multi-GPUs

"

: imlement option of resetting weights

: why 1023?

: unused function

: fail to write external group if the only one external link across GPUs is uni directional (GPU0 -> GPU1, no GPU1 -> GPU0)

: make sure GPU(s) is available first

Member SNN::isPoint3DinRF (const RadiusRF &radius, const Point3D &pre, const Point3D &post)

: not sure where this should go... maybe create some helper file?

"

: need to figure out STP buffer for delays > 1

Member SNN::isGroupWithHomeostasis (int grpId)

: distinguish the function call at CONFIG_STATE and SETUP_STATE, where groupConfigs[0][] might not be available

Member CARLsim::setSpikeRate (int grpId, PoissonRate *spikeRate, int refPeriod=1)

finish docu

Member CARLsim::getNumNeurons ()

finish docu

Member CARLsim::getNumGroups ()

finish docu

Member CARLsim::getNumSynapticConnections (short int connectionId)

finish docu

Member CARLsim::getGroupName (int grpId)

finish docu

Member CARLsim::getGroupId (std::string grpName)

finish docu

Member CARLsim::getGroupGrid3D (int grpId)

: This function is called in SNN::connect() at CONFIG_STATE, which violate the restriction

Member CARLsim::getDelays (int gIDpre, int gIDpost, int &Npre, int &Npost)

finish docu

Member CARLsim::getConductanceGABAb (int grpId)

finish docu

Member CARLsim::getConductanceGABAa (int grpId)

finish docu

Member CARLsim::getConductanceNMDA (int grpId)

finish docu

Member CARLsim::getConductanceAMPA (int grpId)

finish docu

Member CARLsim::getCARLsimState ()

finish docu

Member CARLsim::getNumNeuronsReg ()

finish docu

Member CARLsim::setGroupMonitor (int grpId, const std::string &fname)

finish docu

Member CARLsim::setNeuromodulator (int grpId, float tauDP=100.0f, float tau5HT=100.0f, float tauACh=100.0f, float tauNE=100.0f)

: this should be implemented via default arguments as members of the class, so that the user can call setDefaultNeuromodulators()

Member CARLsim::setCompartmentParameters (int grpId, float couplingUp, float couplingDown)

finish docu

Member CARLsim::setNeuronParameters (int grpId, float izh_a, float izh_b, float izh_c, float izh_d)

finish docu

Member CARLsim::setNeuronParameters (int grpId, float izh_a, float izh_a_sd, float izh_b, float izh_b_sd, float izh_c, float izh_c_sd, float izh_d, float izh_d_sd)

finish docu

Member CARLsim::createSpikeGeneratorGroup (const std::string &grpName, const Grid3D &grid, int neurType, int preferredPartition=ANY, ComputingBackend preferredBackend=CPU_CORES)

finish doc

Member CARLsim::createSpikeGeneratorGroup (const std::string &grpName, int nNeur, int neurType, int preferredPartition=ANY, ComputingBackend preferredBackend=CPU_CORES)

finish docu

Member CARLsim::createGroupLIF (const std::string &grpName, int nNeur, int neurType, int preferredPartition=ANY, ComputingBackend preferredBackend=CPU_CORES)

finish doc

Member CARLsim::createGroup (const std::string &grpName, int nNeur, int neurType, int preferredPartition=ANY, ComputingBackend preferredBackend=CPU_CORES)